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Multi Dimensional Insights from your Omics Data

Unlock actionable insights from omics data through

  • Knowledge Graph
  • AI-powered Analytics
  • Secure Collaboration
  • Biomarker Discovery
  • Precision Medicine
  • Disease Insights
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From Target Overload to Target Prioritization

AI-powered Knowledge Graph

Reveal hidden data patterns in your clinical, multi-omics and real-world data using Natural Language & GenAI.

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Discover

  • Pipelines
  • Data
  • Tools

Build & Run Experiments

  • Reproducible
  • Scalable & Secure
  • Multiple Compute Modalities

Analyze Results

  • Visualization Tools
  • Knowledge Graphs
  • Secondary & Tertiary Analysis

Faster Research

Improved Productivity

Lower Cost

What our customers say

Quark has allowed our scientists to discover pipelines and run them in a self-service manner with no IT intervention. This has shortened the time for results. Truly game changing for research.
Director of Computational Engineering
Leading Fortune 500 BioTech
Quark’s intuitive and simple interface to run pipelines allows me to get my research done faster. I am able to run 1000s of pipelines every week without having to dabble any scripts or reaching out to IT.
Director of BioInformatics
Fortune 500 BioTech

Get actionable biological insights from your data with low-code bioinformatics

Out of the Box Analytics to Democratize Biomarker & Drug Discovery

  • Patient Stratification through powerful Gene & Variant search
  • Build cohorts to identify trait specific biomarkers
  • Perform rich analytics to generate insights
  • Run Differential Gene Expression Analysis
  • Gene Enrichment Analysis (Pathway, GO Enrichment, Disease Enrichment)
  • Quality Control for Groups
  • Genomic Alteration
  • Survival Benefit Analysis
  • Mutant Allele Fraction

Focus on Science. Not Infrastructure.

Reproducible, Scalable, Low-Code Secure Workflows

  • Drug Development
  • Biomarker Discovery
  • Immune Cell Profiling

Drug Discovery

Get immediate access to Cloud infrastructure to run your AlphaFold / OpenFold, protein docking experiments out-of-the- box.

Low-Code Drug Discovery

Drug Discovery

Get immediate access to Cloud infrastructure to run your AlphaFold / OpenFold, protein docking experiments out-of-the- box.

Low-Code Drug Discovery

Epigenomics

Day 0 availability of single cell Chip-seq, ATAC-seq and methylseq analysis workflows.
Low-code Epigenomics

Epigenomics

Day 0 availability of single cell Chip-seq, ATAC-seq and methylseq analysis workflows.
Low-code Epigenomics

Genomics

Run WGS, WES, targeted panel, RNA-Seq and spatial transcriptomics secondary and tertiary analysis workflows out-of-the-box.
Low-code genomics

Genomics

Run WGS, WES, targeted panel, RNA-Seq and spatial transcriptomics secondary and tertiary analysis workflows out-of-the-box.
Low-code genomics

Immuno-oncology

Get access to single immune cell genomics workflows such as immune repertoire sequencing in addition to T-cell epitope predictions.
Low-code innumo-oncology

Immuno-oncology

Get access to single immune cell genomics workflows such as immune repertoire sequencing in addition to T-cell epitope predictions.
Low-code innumo-oncology

Bring Your Own

Bring your own existing pipelines/workflows and run them through the platform. Support for Nextflow, Snakemake, Python, R
Import your pipelines to Quark

Bring Your Own

Bring your own existing pipelines/workflows and run them through the platform. Support for Nextflow, Snakemake, Python, R
Import your pipelines to Quark

Get to Biological Insights faster

Start deriving insights from your data in 3 steps

Select a pipeline from a catalog of ready to run pipelines

Self-service pipeline catalog

Provide Input data and other parameters

Low-code bioinformatics for inputting pipeline parameters

Analyze & Get Insights

Low-code exploratory data analysis

ONE No-code/Low-code Bioinformatics Platform for ALL

Empower both Bench Scientists and Bioinformatics Scientists to run experiments faster.

Quark for

Bench Scientists

Discover & run pipelines through scientist friendly self-service experience

1. Select a pipeline from a catalog of ready to run pipelines
Catalog of Ready to Run Pipelines
2. Run pipeline
  • Run 1000s of experiments in parallel
  • Multiple Compute choices
  • Tuned for Cost and Performance
3. Visualize and analyze results

Start visualizing and analyzing results to get insights from experiments

Automatically Visualize and Analyse Results

Quark for

Bioinformatics Scientists

Easily build new pipelines using a No Code Visual Builder or IDE

Intuitive Drag and Drop Interface
low-code intuitive drag-and-drop interface
  • Easily build new scientific pipelines without any programming expertise
  • Zero learning curve - No scripting / coding efforts required
  • Publish fully built pipelines to the Launchpad
Or use a fully featured IDE
Fully-featured IDE
  • 1-click launch of JupyterLab, Rstudio, Codeserver IDEs
  • Launch from Self contained Bundles with pre-configured Code, Compute, Data
  • CPU / GPU Options. Auto fine-grained IAM for Cloud Services connectivity
Day 0

Deploy Quark and Run 100s of pre-built pipelines

Day 1

Bring existing pipelines
(Nextflow, Snakemake, Custom)

Day 2

Build New Pipelines through Visual Builder

Any Pipeline. Any Compute. Any Cloud

Run scientific pipelines in your choice of Compute and Cloud.

  • Bring your existing pipelines - Nextflow, Snakemake, Custom
  • Run pipelines in your compute choice – Kubernetes, HPC, Batch
  • Run in any cloud -  AWS, GCP, Azure
  • On-Demand / Spot Instances, CPU/GPU options
  • Multiple Storage options for pipelines – Object Store, NFS, Lustre
any pipeline on any compute

Run Pipelines without any IT skills

Empower scientists / researchers to run and analyze pipelines from an intuitive interface.

Run Pipelines without any IT skills
  • Organization wide, searchable, central catalog of ready-to-run pipelines.
  • Intuitive & simplified user interface to run pipelines in 1-click.
  • Analyze and view results through popular visualization tools.
  • Troubleshoot pipeline issues through Out-of-the-box Observability.

Collaborative Research

Seamlessly collaborate with other practitioners by sharing / re-using pipelines and data across the organization

  • Discover existing pipelines built by others in your organization and use them – avoid duplication of efforts
  • Share workspaces with others to collaborate in real-time while building pipelines
  • Publish and share pipeline results to gather feedback from others
  • Discover datasets and packages for pipelines from a central catalog
Collaborative Research

Security and Compliance

Empower scientists / researchers to run and analyze pipelines from an intuitive interface.

Security & Compliance
  • Private Deployment within your organization’s Virtual Private Cloud
  • Clear Isolation of compute, code and data (such as artifacts) between users
  • Enterprise single-sign-on and role based access controls (RBAC)
  • Fine grained IAM policies
  • Encryption in-transit and at-rest

Accelerate Scientific Research through Self Service Computing Platform

Reproducible, Scalable & Secure Workflows

Accelerate Scientific Discoveries

accelerate scientific discoveries

Take your Scientific Pipelines from idea to production through a self service platform for building and running pipelines.

Lower barrier for Cloud Infrastructure

low barrier for cloud infrastructure

Get immediate access to Cloud Infrastructure for executing your pipelines without being throttled by access to Infrastructure and Tools. No more waiting on tickets & queues.

End to End Platform for scientific workflows

end-to-end pipeline workflows

An end-to-end platform for building & executing pipelines, access & visualize results and collaborate with others.

  • Scientist Experience
  • Access to Infrastructure
  • New Scientific Pipelines
  • Running Scientific Pipelines
  • Finding prior research
  • Scientific Software & Workflows
  • Visualizing Results
without Quark, slow time-to-insight cycles
without

Quark

  • Work through DevOps Tickets & Manual Processes
  • Weeks. Delayed, Limited by DevOps Bandwidth
  • Many Weeks
  • Custom Scripts
  • Word of mouth. Internal Knowledge Base
  • Manually managed
  • Install custom tools. Work with IT
With Quark, faster time-to-insight cycles
with

Quark

  • Self Service Platform
  • Immediate & Self Service
  • Days
  • Self Service GUI, APIs and CLI
  • Centralized Catalog of ready to run pipelines
  • Pre-built Packages & Workflows
  • Integrated popular Visualization Tools
  • Improved Productivity
  • Faster Research
  • Democratize Science
  • Immediate Feedback & Collaboration
without Quark, slow time-to-insight cycles
With Quark, faster time-to-insight cycles

Scientist Experience

without

Quark

Work through DevOps Tickets & Manual Processes

with

Quark

Self Service Platform

  • Improved Productivity

Access to Infrastructure

without

Quark

Weeks. Delayed, Limited by DevOps Bandwidth

with

Quark

Immediate & Self Service

New Scientific Pipelines

without

Quark

Many Weeks

with

Quark

Days

  • Faster Research

Running Scientific Pipelines

without

Quark

Custom Scripts

with

Quark

Self Service GUI, APIs and CLI

Finding prior research

without

Quark

Word of mouth. Internal Knowledge Base

with

Quark

Centralized Catalog of ready to run pipelines

  • Democratize Science

Scientific Software & Workflows

without

Quark

Manually managed

with

Quark

Pre-built Packages & Workflows

Visualizing Results

without

Quark

Install custom tools. Work with IT

with

Quark

Install custom tools. Work with IT

  • Immediate Feedback & Collaboration

One Central Platform for Science

A common, centralized platform to Discover, Run and Analyze Experiments

Compute

  • Multiple Compute Modalities
  • Decoupled from Pipeline & data
  • Scaling, Performance and cost optimized
  • Kubernetes
  • Batch
  • HPC

Software

  • Readily available Pipelines ( Multi Omics, Computational biology).
  • Store & Analyze Omics Data
  • Pipeline Builder & Purpose Built Visualizations
  • Host Scientific Apps, APIs & Microservices
  • AI/ML, GenAI Assistant
  • Nextflow
  • Snakemake
  • R
  • AI/ML
  • Python
  • Scientific Application
  • Package & Tools
  • APIs / Microservices
  • Gen AI Assistant

Data

  • Centralized Data & Metadata Management
  • Public and Private data sources

Collaboration

  • Discover Prior Research
  • Collaboration between Bench Scientists & Bioinformatics Scientists

Learn, Connect, and Innovate

Recent Articles

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DNA_Methylation_Wikimedia

Decoding Epigenomic Patterns with Quark

Epigenetics focuses on gene expression patterns independent of DNA sequences, notably through cytosine methylation. Understanding the methylome enhances insights into cellular functions, cancers, and aging. Quark simplifies methyl-seq data analysis, ensuring robust and reproducible results, essential for precision medicine and integrative analysis, while addressing complexity in interpretation and visualization.
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cell seen under microscope

Understanding Conserved Patterns by Leveraging scRNA-seq Integration

Single-cell RNA sequencing (scRNA-seq) enhances understanding of cellular heterogeneity, pivotal for cancer research. However, challenges like batch effects and data complexity hinder analysis. Quark provides an end-to-end solution through horizontal integration, facilitating robust comparative analyses, accelerating insights, and enhancing workflow accessibility, crucial for effective biomarker discovery and precision medicine.
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Accelerating Proteomics Research for Biomarker Discovery in Clinical Applications

Proteomics is the comprehensive study of proteins in an organism that uncovers their dynamic roles and complexities. It aids biomarker discovery for diseases, improving drug development and treatment monitoring. Despite analytical challenges, advancements in mass spectrometry and platforms like Quark simplify data analysis, enabling researchers to identify and interpret crucial protein-related insights effectively.
Learn more

Super charge your scientists today!

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